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Short time-series expression miner stem

SpletExpression Miner (STEM)software or method as part of the data analysis: M. Chamankhah, E. Eftekharpour, S. Karimi-Abdolrezaee, P.C. Boutros, S. San-Marina, M.G. Fehlings. Genome-wide gene expression profiling of stress response in a spinal cord clip compression injury model. BMC Genomics, 14:583, 2013. Splet12. apr. 2024 · STEM (Short Time-series Expression Miner) analysis indicated significant variations in the mRNA expression across distinct muscle development stages. The differential expression of 12 selected ...

STEM 1.3.8 – Short Time-series Expression Miner

Splet08. apr. 2016 · Differentially expressed genes (DEGs) were detected, and the combination of functional enrichment analysis with Short Time-series Expression Miner (STEM) clustering analysis was used to explore the overall gene expression changes and related functions during fruit dehiscence. SpletShort Time-series Expression Miner (STEM) See the STEM home page for the executable, user manual, citation information, mailing list, version log, and additional information. … digital scale inconsistent weight https://northeastrentals.net

Short Time-Series Expression Miner (STEM) analysis of DEG expression …

SpletThe Short Time-series Expression Miner (STEM) is a Java program for clustering, comparing, and visualizing short time series gene expression data from microarray experiments (~8 time points or fewer). STEM allows researchers to identify significant temporal expression profiles and the genes associated with these profiles and to … Splet20. jun. 2024 · The existing research on dairy cow mammary gland genes is extensive, but there have been few reports about dynamic changes in dairy cow mammary gland genes as milk yield decrease. For the first time, transcriptome analysis based on short time-series expression miner (STEM) and histological observations were performed using the … Splet22. dec. 2024 · Short Time-series Expression Miner (STEM) software was applied to analyze the expression patterns of DEGs along with the increase in senescence degree of the tobacco leaf ( Ernst and Bar-Joseph, 2006 ). digital scale for hoyer lift

Biology Free Full-Text Molecular Characterization Related to …

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Short time-series expression miner stem

Frontiers Integrative Analyses of Biochemical Properties and ...

Splet18. jul. 2024 · STEM Wrapper: The STEM Miner tool is a well-known tool used for the analysis of short time series data. Since many published papers discuss the analysis of such kind of data, we decided to insert this tool into …

Short time-series expression miner stem

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Splet14. apr. 2024 · Furthermore, short time-series expression miner (STEM) and gene ontology (GO) enrichment analyses revealed five terms related to gamete generation. In addition, two-color fluorescent in situ hybridization results suggested that dmrt1 might play a vital role in oogenesis during the early stage of ovarian development. Overall, our insights … Splet12. apr. 2024 · The 553 filtered RLKs were subjected to cluster analysis using short time-series expression 554 miner (STEM) program (version 1.3.13) with 15 maximum model profiles and 2 555 maximum unit change in model profiles between individual segments. The profile 556 significance was calculated by Fisher’s exact test and multiple …

SpletTo examine the expression pattern of DEGs in different frequencies, the expression data of each sample (in the order of treatment) were normalized to 0, log2 (v1/v0), and log2 (v2/v0), and then clustered using the Short Time-series Expression Miner software (STEM). 26 The parameters were set as follows: (1) maximum unit change in model profiles ... SpletShort Time-series Expression Miner (STEM) See the STEM home page for the executable, user manual, citation information, mailing list, version log, and additional information. Dynamic Regulatory Events Miner (DREM)

SpletResults We introduce the Short Time-series Expression Miner (STEM) the first software program specifically designed for the analysis of short time series microarray gene … Splet10. maj 2024 · Gene expression pattern according to transcriptome data revealed participation of the PeDoG genes in tissue and organ development. Analysis using Short Time-series Expression Miner (STEM) tool revealed that the PeDoG gene family is also associated with rapid early shoot growth.

Splet14. apr. 2024 · Furthermore, short time-series expression miner (STEM) and gene ontology (GO) enrichment analyses revealed five terms related to gamete generation. In addition, …

Splet05. apr. 2006 · In this paper we introduce the Short Time-series Expression Miner (STEM), the first software application designed specifically for the analysis of short time series gene expression datasets (3–8 time points). Data from short time series gene expression experiments poses unique challenges. digital scales for body weight amazonSplet Short Time-series Expression Miner (STEM) analysis of the GMSCs. (A)... Download Scientific Diagram Short Time-series Expression Miner (STEM) analysis of the GMSCs. (A) Without F.... digital scale for weight lossSplet24. jun. 2011 · The significance of co-expression was then assessed by applying the clustering algorithm implemented in the short time-series expression miner STEM (version 1.3.6) [28,29] for co-expression profiling and a subsequent comparison of the number of genes assigned to a specific co-expression profile model to the expected number of … digital scale reviews bathroomSplet23. okt. 2024 · STEM（Short Time-series Expression Miner）是一款专门针对梯度排序的表达量数据进行趋势分析的软件。 STEM趋势分析的意义 趋势分析将表达模式相似的基因 … fors driving standards policySpletShort Time-Series Expression Miner (STEM) Analysis. We performed STEM analysis 32 of the GSE54514 dataset in order to cluster gene modules in healthy controls, sepsis … fors defect sheetsSplet22. jul. 2024 · Short time-series expression miner (STEM) analysis. The mRNAs highly related to stemness were used to perform STEM analysis using STEM v1.3.8 . The … for scytheSpletGenes were clustered using Short Time-series Expression Miner (STEM) analysis tool with the abscissa representing the time scale of 5, 15, 30, and 60 minutes after the glucose pulse, and the... forseaa